Sakina Saif

Hi, They are available here. Please let me know if you can access them. https://gist.github.com/ssaif/fbb164d1f28b3f4133c3 (Error lines pasted with flanks from the run log) https://gist.github.com/ssaif/40228395b0f50f9585e9 (Yaml file for freebayes validation)...

Hi Brad, Thanks for the quick reposnse. I did a few checks on the vcf file and it seems to check out OK. Another thing I want to point out...

Forgot to share this that I also found that the freebayes vcf did not have calls on chrM because the Nimblegen bed file did not have chrM regions. But the...

This was using BCBIO version 0.8.1a (alpha), not sure if I mentioned this earlier. Thanks, Sakina