Sakina Saif

pkg_resources.ResolutionError when running "collapse_isoforms_by_sam.py"

2

`collapse_isoforms_by_sam.py --input HL60_fltnc_dedup.fasta -s HL60_fltnc_dedup.fasta.sorted.sam -c 0.99 -i 0.95 --gen_mol_count -o HL60_fltnc_dedup.5merge &` [1] 41376 (SQANTI3.env) [/home/ubuntu/Yale_PacBio_Data/isoseq_single-cell_analysis] Traceback (most recent call last): File "/home/ubuntu/miniconda3/envs/SQANTI3.env/bin/collapse_isoforms_by_sam.py", line 4, in __import__('pkg_resources').run_script('cupcake==28.0.0', 'collapse_isoforms_by_sam.py') File...