ximmer
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ssadedin
Ximmer is a system for CNV calling on exome and targeted genomic sequencing
Hi, I am trying to use ximmer with hg38 so I noticed its better to try with 3.0 alpha branch. Now I am trying to update Dockerfile. was able to...
We had a GC overhead limit error in the create analysable target stage, which prompted us to take a look at the bpipe.log which is attached below. It seems like...
Hi, I am trying to install ximmer but cannot install xhmm properly "Tool xhmm did not probe successfully even after installation." The error messages are: > g++ -c -Wall -O3...
Hi, I would like to know how many BAM ( illumina exome) file do I need to run ximmer ? Should it come from the same Run ? Thank you
Hi, i have this java error Configured verbose logging Ximmer [1] INFO |3:36:26 Configured verbose logging Ximmer [1] INFO |3:36:26 Simulation disabled. Ximmer [1] INFO |3:36:26 No run directory configured:...
This error occurred while the Ximmer pipeline was drawing a large number of CNVs in parallel: ``` CNVDiagram [22] INFO |12:30:05 Caller ed cnvs are: [7843497 - 7844054 (qual=6.59)] CNVDiagram...
Hello, Ximmer looks very promising, so I would really love to get it to work. Unfortunately, all tools return 1 and the very first hint of what is going wrong...
Hi, I' trying to run ximmer (analysis only) using docker and a minimal configuration file and am encountering the following error regardless of the bam files and target regions used....
Hello, I am having a hard time installing xhmm within ximmer. This is the error I am getting: ``` g++ -c -Wall -Werror -O3 -I./sources/include sources/lib/MatrixDecomp.cpp -o build/lib/MatrixDecomp.o In file...
Your install instructions state simply: """git clone https://github.com/ssadedin/ximmer.git""" """cd ximmer" """./bin/install" but this install script/binary is not part of the repo and it's unclear how to install this tool. I'm...
