Simon Sadedin

NB: I see that the linker error I got was identical to this: https://github.com/brentp/slivar/issues/13 So I guess perhaps this request is probably dependent on sorting that out.

Thanks @rob-p - good to know about the warnings, and thanks for the info on the alt contig situation. I'll do some testing and see what the empirical behaviour is...

I'm having a bit of trouble understanding what you mean here - taking your example of the number of nodes, are you saying that for a pipeline such as ```...

I have made an initial attempt at array support in the lsf_array branch: https://github.com/ssadedin/bpipe/tree/lsf_array This has been based on OpenLava, via [TeraProc's](http://openlava.teraproc.com/) service (which is awesome). It would be great...

This sounds like a pretty useful / important capability for these kind of clusters. Just thinking about how to implement it though, it probably is not trivial - Bpipe would...

That's an interesting solution - thanks for posting it. I think we may need something like this to support AWS / EC2. Typically if you start up an instance with...

I definitely need to do some profiling on this to figure out the memory constraint. It's odd because I routinely run with a lot more files than that. One thing...

Thanks @lonsbio - agreed! I suspect it was never really intended to have it print that out, it was more a debug thing left in. So that is easy to...

See 9d1f6274e300344f0ae33b667f3837e929280b80

closing for now as primary issue addressed, remaining features can be considered separately