Error: bpipe.executor.SlurmCommandExecutor failed to return a job id

[stefandiederich]

Hi,

I tried to use bpipe with slurm on our Ubuntu server. We installed slurm version 0.4.3 and bpipe version 0.9.9.2 (release version, not build from source).

After the installation we attempted to test the installation with your helloworld example tutorial. But the command bpipe hallo.pipe gave us the following error:

`==================================================================================================== | Starting Pipeline at 2017-04-27 14:34 |

=========================================== Stage hello ============================================ ERROR: Job runner bpipe.executor.SlurmCommandExecutor failed to return a job id for job 4 (hello) despite reporting success exit code for command:

bash /BioinfSoftware/bpipe/bin/../bin/bpipe-slurm.sh start

Raw output was:[ ]

========================================= Pipeline Failed ==========================================

Job runner bpipe.executor.SlurmCommandExecutor failed to return a job id for job 4 (hello) despite reporting success exit code for command:

bash /BioinfSoftware/bpipe/bin/../bin/bpipe-slurm.sh start

Raw output was:[ ]

Use 'bpipe errors' to see output from failed commands.`

Do you have any idea what we did wrong here?

Thanks in advance Stefan Diederich