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Disk Error Error 122 Preventing Saving Files
Issue Report Checklist
- [x] Searched the issues page for similar reports
- [x] Read the relevant sections of the Spyder Troubleshooting Guide and followed its advice
- [x] Reproduced the issue after updating with
conda update spyder(orpip, if not using Anaconda) - [x] Could not reproduce inside
jupyter qtconsole(if console-related) - [x] Tried basic troubleshooting (if a bug/error)
- [x] Restarted Spyder
- [x] Reset preferences with
spyder --reset - [x] Reinstalled the latest version of Anaconda
- [x] Tried the other applicable steps from the Troubleshooting Guide
- [x] Completed the Problem Description, Steps to Reproduce and Version sections below
Problem Description
I am having an issue executing code that has saving files as a step. For example saving STL files, writing to csv file, have all returned Errorno122 disk quota error. I checked my storage and there is more than enough space. I have reset spyder which has caused no change. I have tried to uninstall spyder, update conda, and update spyder but all of these result in the following error report.
Traceback (most recent call last):
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/exceptions.py", line 1125, in __call__
return func(*args, **kwargs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/main.py", line 86, in main_subshell
exit_code = do_call(args, p)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/conda_argparse.py", line 93, in do_call
return getattr(module, func_name)(args, parser)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/notices/core.py", line 72, in wrapper
return_value = func(*args, **kwargs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/main_update.py", line 22, in execute
install(args, parser, 'update')
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/install.py", line 256, in install
unlink_link_transaction = solver.solve_for_transaction(
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 152, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 195, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 300, in solve_final_state
ssc = self._collect_all_metadata(ssc)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/common/io.py", line 86, in decorated
return f(*args, **kwds)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 463, in _collect_all_metadata
index, r = self._prepare(prepared_specs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 1057, in _prepare
reduced_index = get_reduced_index(self.prefix, self.channels,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/index.py", line 297, in get_reduced_index
new_records = SubdirData.query_all(spec, channels=channels, subdirs=subdirs,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 152, in query_all
result = tuple(concat(executor.map(subdir_query, channel_urls)))
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/_base.py", line 609, in result_iterator
yield fs.pop().result()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/_base.py", line 446, in result
return self.__get_result()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
raise self._exception
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/thread.py", line 58, in run
result = self.fn(*self.args, **self.kwargs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 144, in <lambda>
subdir_query = lambda url: tuple(SubdirData(Channel(url), repodata_fn=repodata_fn).query(
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 157, in query
self.load()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 222, in load
_internal_state = self._load()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 413, in _load
fh.write(raw_repodata_str or '{}')
OSError: [Errno 122] Disk quota exceeded
$ /gpfs_projects/sriharsha.marupudi/anaconda3/bin/conda update spyder
environment variables:
CIO_TEST=
active environment : base
active env location : /gpfs_projects/sriharsha.marupudi/anaconda3
shell level : 1
user config file : /home/sriharsha.marupudi/.condarc
populated config files : /home/sriharsha.marupudi/.condarc conda version : 4.14.0 conda-build version : 3.21.9 python version : 3.9.12.final.0 virtual packages : __cuda=11.7=0 __linux=5.4.0=0 __glibc=2.27=0 __unix=0=0 __archspec=1=x86_64 base environment : /gpfs_projects/sriharsha.marupudi/anaconda3 (writable) conda av data dir : /gpfs_projects/sriharsha.marupudi/anaconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /gpfs_projects/sriharsha.marupudi/anaconda3/pkgs /home/sriharsha.marupudi/.conda/pkgs envs directories : /gpfs_projects/sriharsha.marupudi/anaconda3/envs /home/sriharsha.marupudi/.conda/envs platform : linux-64 user-agent : conda/4.14.0 requests/2.28.1 CPython/3.9.12 Linux/5.4.0-121-generic ubuntu/18.04.6 glibc/2.27 UID:GID : 5856:5856 netrc file : None offline mode : False
Traceback (most recent call last):
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/exceptions.py", line 1125, in __call__
return func(*args, **kwargs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/main.py", line 86, in main_subshell
exit_code = do_call(args, p)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/conda_argparse.py", line 93, in do_call
return getattr(module, func_name)(args, parser)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/notices/core.py", line 72, in wrapper
return_value = func(*args, **kwargs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/main_update.py", line 22, in execute
install(args, parser, 'update')
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/cli/install.py", line 256, in install
unlink_link_transaction = solver.solve_for_transaction(
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 152, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 195, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 300, in solve_final_state
ssc = self._collect_all_metadata(ssc)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/common/io.py", line 86, in decorated
return f(*args, **kwds)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 463, in _collect_all_metadata
index, r = self._prepare(prepared_specs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/solve.py", line 1057, in _prepare
reduced_index = get_reduced_index(self.prefix, self.channels,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/index.py", line 297, in get_reduced_index
new_records = SubdirData.query_all(spec, channels=channels, subdirs=subdirs,
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 152, in query_all
result = tuple(concat(executor.map(subdir_query, channel_urls)))
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/_base.py", line 609, in result_iterator
yield fs.pop().result()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/_base.py", line 446, in result
return self.__get_result()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
raise self._exception
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/concurrent/futures/thread.py", line 58, in run
result = self.fn(*self.args, **self.kwargs)
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 144, in <lambda>
subdir_query = lambda url: tuple(SubdirData(Channel(url), repodata_fn=repodata_fn).query(
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 157, in query
self.load()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 222, in load
_internal_state = self._load()
File "/gpfs_projects/sriharsha.marupudi/anaconda3/lib/python3.9/site-packages/conda/core/subdir_data.py", line 413, in _load
fh.write(raw_repodata_str or '{}')
OSError: [Errno 122] Disk quota exceeded
$ /gpfs_projects/sriharsha.marupudi/anaconda3/bin/conda update spyder
environment variables:
CIO_TEST=
active environment : base
active env location : /gpfs_projects/sriharsha.marupudi/anaconda3
shell level : 1
user config file : /home/sriharsha.marupudi/.condarc
populated config files : /home/sriharsha.marupudi/.condarc conda version : 4.14.0 conda-build version : 3.21.9 python version : 3.9.12.final.0 virtual packages : __cuda=11.7=0 __linux=5.4.0=0 __glibc=2.27=0 __unix=0=0 __archspec=1=x86_64 base environment : /gpfs_projects/sriharsha.marupudi/anaconda3 (writable) conda av data dir : /gpfs_projects/sriharsha.marupudi/anaconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /gpfs_projects/sriharsha.marupudi/anaconda3/pkgs /home/sriharsha.marupudi/.conda/pkgs envs directories : /gpfs_projects/sriharsha.marupudi/anaconda3/envs /home/sriharsha.marupudi/.conda/envs platform : linux-64 user-agent : conda/4.14.0 requests/2.28.1 CPython/3.9.12 Linux/5.4.0-121-generic ubuntu/18.04.6 glibc/2.27 UID:GID : 5856:5856 netrc file : None offline mode : False
What steps reproduce the problem?
- Run a script that saves data to a csv
- Try and save a newly written script
- Copy a file to storage
What is the expected output? What do you see instead?
Running a script that saves a fiel or saving a newly written script result in Error 122. I have also tried editing a file I already had which was unable to be saved due to this error. Somehow all of the code in that file was erased as well.
Paste Traceback/Error Below (if applicable)
Error message:
[Errno 122] Disk quota exceeded
Versions
- Spyder version: 5.2.2 None
- Python version: 3.9.12 64-bit
- Qt version: 5.9.7
- PyQt5 version: 5.9.2
- Operating System: Linux 5.4.0-110-generic
Dependencies
# Mandatory:
atomicwrites >=1.2.0 : 1.4.0 (OK)
chardet >=2.0.0 : 4.0.0 (OK)
cloudpickle >=0.5.0 : 2.0.0 (OK)
cookiecutter >=1.6.0 : 1.7.3 (OK)
diff_match_patch >=20181111 : 20200713 (OK)
intervaltree >=3.0.2 : 3.1.0 (OK)
IPython >=7.6.0;<8.0.0 : 7.31.1 (OK)
jedi >=0.17.2;<0.19.0 : 0.18.1 (OK)
jellyfish >=0.7 : 0.9.0 (OK)
jsonschema >=3.2.0 : 4.4.0 (OK)
keyring >=17.0.0 : 23.4.0 (OK)
nbconvert >=4.0 : 6.4.4 (OK)
numpydoc >=0.6.0 : 1.4.0 (OK)
parso >=0.7.0;<0.9.0 : 0.8.3 (OK)
pexpect >=4.4.0 : 4.8.0 (OK)
pickleshare >=0.4 : 0.7.5 (OK)
psutil >=5.3 : 5.9.0 (OK)
pygments >=2.0 : 2.11.2 (OK)
pylint >=2.5.0 : 2.14.5 (OK)
pyls_spyder >=0.4.0 : 0.4.0 (OK)
pylsp >=1.3.2;<1.4.0 : 1.3.3 (OK)
pylsp_black >=1.0.0 : 1.0.0 (OK)
qdarkstyle =3.0.2 : 3.0.2 (OK)
qstylizer >=0.1.10 : 0.1.10 (OK)
qtawesome >=1.0.2 : 1.0.3 (OK)
qtconsole >=5.2.1;<5.3.0 : 5.2.2 (OK)
qtpy >=1.5.0 : 2.0.1 (OK)
rtree >=0.9.7 : 0.9.7 (OK)
setuptools >=49.6.0 : 61.2.0 (OK)
sphinx >=0.6.6 : 5.0.2 (OK)
spyder_kernels >=2.2.1;<2.3.0 : 2.2.1 (OK)
textdistance >=4.2.0 : 4.2.1 (OK)
three_merge >=0.1.1 : 0.1.1 (OK)
watchdog >=0.10.3 : 2.1.6 (OK)
xdg >=0.26 : 0.27 (OK)
zmq >=17 : 23.2.0 (OK)
# Optional:
cython >=0.21 : 0.29.30 (OK)
matplotlib >=2.0.0 : 3.5.1 (OK)
numpy >=1.7 : 1.21.5 (OK)
pandas >=1.1.1 : 1.4.3 (OK)
scipy >=0.17.0 : 1.7.3 (OK)
sympy >=0.7.3 : 1.10.1 (OK)```
Hey @harshamarupudi56, thanks for reporting. It seems you don't have enough space assigned to you in your cluster to run
conda update spyder
If you only need to use Spyder, or a small number of the packages that come with Anaconda, I'd suggest you to uninstall it and install Miniconda instead.
After that you can create an environment only with what you need, by running the following commands in a terminal
conda create -n myenv spyder python=3.9
conda activate myenv
conda install <additional packages that you need>
Perhaps that helps you to save enough space to keep working in your cluster. Let us know if it works for you.
