Susana Posada Céspedes

In general it is a good idea. However, we support distribution with rule-specific conda environments, which we find to be suitable for HPC. A containerised solution could help users to...

Hi Derrick By default, overlapping windows are constructed taking reads that cover at least 80% of the window. You can have a look at the coverage.txt file and check how...

This should solve the issue, while allowing to omit windows with low-coverage https://github.com/cbg-ethz/shorah/pull/58