Daniel Donovan
Daniel Donovan
Hey, I really like this boilerplate for far. I've made a few changes to it but overall it was exactly what I was looking for. One question I've had is...
I built fastp in a docker image and it was working with v0.22.0 (it currently works on my local machine however I build that docker image over a week ago);...
It won't create the correct ECR Repository Name You need to update `75_ecr.yml.j2 file` and replace: ``` RepositoryName: "airflow-{{ ENVIRONMENT }}" ``` to something like: ``` RepositoryName: "{{ serviceName }}-{{...
Is there an example `.env` file? Reading through the code I am seeing a lot of `$ENV` vars but it's spread across different files.
**Ask a question** I would like to register a command with a `Namespace` similarly to how [Flask does it](https://flask.palletsprojects.com/en/2.2.x/cli/#registering-commands-with-blueprints) For example, ``` import click from ..views import api @api.cli.command("setup") @click.argument("name")...
I am running the following command ``` checkm lineage_wf -f "mysample_downsample10pct_metabat.checkm.txt" -t 40 -x fa metabat_folder checkm_folder ``` Here is my traceback: ``` Traceback (most recent call last): File "/opt/conda/bin/checkm",...
[//]: # (Please do not include your AWS account or credentials as part of the bug request.) **Describe the Bug** [//]: # agc context deploy not rebuilding workflow.zip file, even...
How do we run workflows that use private GitHub (and dockerhub) repositories? What do we need to include in our setup?
**Describe the Bug** Worker processes not spawning with enough memory or scaling; therefore Nexflow will error with exit status 137 (not enough memory) **Steps to Reproduce** ``` name: foo schemaVersion:...
I am getting an output text file with inconsistent formatting, here is a snippet of some of the output I am getting. Take the following snippet of text output, ```...