Stephen Ficklin

Create Custom Tables with YML Files

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### Task Description Currently, when we add custom tables, they are hard-coded in the prepare step, and if a module developer wants to create a custom table they have to...

Automated Tests are needed for Tripal Job Management

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This is to remind us to do functional tests for job management.

Add an API for extension modules to make it easy to add attribution (e.g. who created the module, link to documentation or pub) and consistent between modules. Additionally, we could...

Suggested Fix 1. Create a Tripal job Plugin - TripalJob abstract class - private logger object - protected functions to use the logger object. - Note: need to change the...

Check that all the recent Tripal 3 updates to the OBO Loader made it into Tripal 4

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The OBO loader has been updated in Tripal v3. I know at some point we need to go back through all of our Tv3 updates and see if they need...

This issue is to keep track of deprecated functions in Tripal v4. - Please edit this post and add new ones to this list. - Check the box when 1)...

I could not finish the `OBOImporter::postRun()` function because there are two components that are not implemented: materialized views and setting up the `cvtermpath` table. Once these are implemented we should...

While the TripalImporter is99.9999% functional via PR tripal/t4d8#230 . The `tripal_run_importer` API function has commented out the code for calling the `tripal_chado_map_cvterms()` function and the `tripal_tripal_cron_notification()`. Once those are implemented...