spencer411

I am using anvi'o to look at the pan-genome of ~170 bacterial isolates. I have had no problem installing and getting my data into anvio, but now I am at...

Not really an issue for me per se, but since there are so many related issues here I thought it might make your life easier to add a link to...

Some missing results in output file.

1

I am analyzing a dataset that consists of uncharacterized streptococcus isolates downloaded from NCBI. Fastani executes fine with no error message, yet my output file is missing a large number...

Has the snapshot feature been abandoned?

4

I cannot get it to work on any browser. Is there any other way to save a high resolution figure output? I'm assuming constantly updating the feature became exhausting in...

Pipeline not creating SNP consequences file

6

I am working with a large dataset and have been merging to an existing dataset over and over which up to this point has been working fine. As of my...

Way to create kraken style bracken report directly from .bracken file?

1

I want to create a kraken style report directly from some .bracken files that I have manipulated using the filter_bracken_out.py script from Kraken Tools (meaning I can't use the initial...

I know this program is under development, but I am trying to id a bunch of species, and the results I am getting are all over the map. For example,...