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Published 20 hours ago • verified publisher icon spacetx

parameterize trackpy_local_max_peak_finder?

Open neuromusic opened this issue 4 years ago • 1 comments

https://github.com/spacetx/starfish/blob/47de54081c61e68932364a7fb53ed0f6cb5752b5/starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py#L134

neuromusic avatar Feb 10 '20 20:02 neuromusic

Clarification of issue from @ambrosejcarr:

Users of starfish have asked for different types of summaries of intensity values to be reported for those algorithms that integrate over spots. Max, mean, and sum are all examples of reduction operations that could do the integration.

mattcai avatar Feb 11 '20 21:02 mattcai