sourmash
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additional 0.12.x core thoughts
from efforts in https://github.com/sourmash-bio/sourmash_plugin_branchwater/pull/197 and https://github.com/sourmash-bio/sourmash/pull/2948
- consider allowing missing paths when loading collections and reporting the number missed or failed to the user. Force to allow failures?
- Can we load a manifest as a collection directly?
- Would it be worth adding a sketchtype option to
Selection
to explicitly select on MinHash vs LargeMinHash vs HLL sketches? - How should we handle loading multisig files? See https://github.com/sourmash-bio/sourmash_plugin_branchwater/pull/202
- should we add a direct loading function for LargeMinHash?
- should we add Manifest scaled selection for LargeMinHash?
- or, can we have a direct loader that loads MinHash or LargeMinHash, since they have nearly identical usages? (... I wasn't really sure how to work with largeminhash)