visualizing the sourmash gather output with metacoder

[taylorreiter]

dumping this so it's findable

https://gist.github.com/taylorreiter/50c55359393bf2bd91a07953d6e2f9c8

[ctb]

code updated to run with Rscript nicely here - https://github.com/ctb/2022-may-cfde-demo/blob/main/sourmash_gather_to_metacoder_plot.R

walkthrough of doing gather + plot with an iHMP sample, here - https://github.com/ctb/2022-may-cfde-demo/blob/main/demo-walkthrough.ipynb

full install instructions here - https://github.com/ctb/2022-may-cfde-demo/blob/main/INSTALL.md

for a conda install of the relevant R packages, you need: r-dplyr r-metacoder r-readr