soluna1

Hi, Wanting to do something similar, i.e. to allow '3 adapters to occur at the end but also until a certain number of bases to the left (but not all...

Hi, thanks for your answer, Yes, I can confirm that --times = 2 is included in the parameters. Ok. I will do that, I thought in normal regex syntax, but...

Thanks for confirming that. I've used the N{22}X option with 3' adapters and it worked perfectly. Just, I added first the correction for error rates to realise in the results...

Hi, couple of years later still finding the same issue with HR with using code from example 8, based on spo2_algorithm.h library. But, I get reasonable good data with example...

Hi @caferrick , thank you for the updated code!! I'll let you know asap how it works. Sure it's great!

Hi Daniel, yes, I'm using dada2 tool (and pr2_version_4.11.1_dada2.fasta) database. The command is: `taxa

Hi Daniel, Thank you so much for your replay. I'm using 1.10.1 dada2 version. So, I you said (and also from the Dada2 GitHub) perhaps I was too optimistic about...

Hi Daniel, Thank you for the information. It is not exactly the same problem, but I also found "weird" results from dada2 AssignTaxonomy function. I commented this in dada2 Github...

Hi Savkov, thanks for addressing this issue. I'm not an expert coder at all, so personally I can't help very much. However, I colleague of mine is working also with...

Hi, I've experience also the problem of time consuming when running the collpaseNoMissmatch function. But, reading the comments here, I doubt about the need of its application in my case....