terminate called after throwing an instance of 'std::logic_error'

[lyy-369]

This is my shell (/home/lyy/Desktop/ColabFold/localcolabfold/colabfold-conda) lyy@lyy-System-Product-Name:~/Desktop$ colabfold_search /home/lyy/Desktop/VenusREM/data/proteingym_v1/aa_seq/A0A1I9GEU1_NEIME_Kennouche_2019.fasta /home/lyy/data/db_folder msas

Index version: 16 Generated by: 17.b804f ScoreMatrix: VTML80.out Index version: 16 Generated by: 17.b804f ScoreMatrix: VTML80.out [=================================================================] 100.00% 1 eta - terminate called after throwing an instance of 'std::logic_error' what(): basic_string: construction from null is not valid Traceback (most recent call last): File "/home/lyy/Desktop/ColabFold/localcolabfold/colabfold-conda/bin/colabfold_search", line 8, in sys.exit(main()) File "/home/lyy/Desktop/ColabFold/localcolabfold/colabfold-conda/lib/python3.10/site-packages/colabfold/mmseqs/search.py", line 319, in main mmseqs_search_monomer( File "/home/lyy/Desktop/ColabFold/localcolabfold/colabfold-conda/lib/python3.10/site-packages/colabfold/mmseqs/search.py", line 94, in mmseqs_search_monomer run_mmseqs(mmseqs, ["expandaln", base.joinpath("qdb"), dbbase.joinpath(f"{uniref_db}{dbSuffix1}"), base.joinpath("res"), dbbase.joinpath(f"{uniref_db}{dbSuffix2}"), base.joinpath("res_exp"), "--db-load-mode", str(db_load_mode), "--threads", str(threads)] + expand_param) File "/home/lyy/Desktop/ColabFold/localcolabfold/colabfold-conda/lib/python3.10/site-packages/colabfold/mmseqs/search.py", line 25, in run_mmseqs subprocess.check_call([mmseqs] + params) File "/home/lyy/Desktop/ColabFold/localcolabfold/colabfold-conda/lib/python3.10/subprocess.py", line 369, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '[PosixPath('mmseqs'), 'expandaln', PosixPath('msas/qdb'), PosixPath('/home/lyy/data/db_folder/uniref30_2302_db.idx'), PosixPath('msas/res'), PosixPath('/home/lyy/data/db_folder/uniref30_2302_db.idx'), PosixPath('msas/res_exp'), '--db-load-mode', '0', '--threads', '64', '--expansion-mode', '0', '-e', 'inf', '--expand-filter-clusters', '1', '--max-seq-id', '0.95']' died with <Signals.SIGABRT: 6>.

[milot-mirdita]

This should be fixed in git mmseqs. You can download precompiled binaries at https://mmseqs.com/latest/ and pass the path to colabfold_search --mmseqs. We will tag new releases soon