ColabFold icon indicating copy to clipboard operation
ColabFold copied to clipboard

[RuntimeError: Resource exhausted] Upper-limit for protein length with Colab Pro?

Open sdtruong opened this issue 3 years ago • 1 comments

I'm running a job with a length of ~1,100 amino acids. This requires 13497323384 (~13.5 Gb) of memory. However, I get the following:

RuntimeError: Resource exhausted: Out of memory while trying to allocate 13497323384 bytes.

I am currently using a GPU with High-RAM settings.

sdtruong avatar Nov 01 '21 18:11 sdtruong

For the advanced notebook and fairly standard settings, with turbo on and the high-mem runtime it's over 1300 and under 1400 AA for me; when I do hit the limit it's typically around that 13.5GB mark.

zach-hensel avatar Nov 18 '21 18:11 zach-hensel