Add alphafold 3

[wswxyq]

Hello, Thanks for your work on moving alphafold to Colab. Since AlphaFold3 is open sourced now, do you plan to add it to colabfold? Thanks!

[1peng2333]

I created this notebook to interact with AlphaFold 3 in Colab-like environment. It emulates the I/O of ColabFold with similar outputs. There are some challenges involving with the implementation of mmseqs using AlphaFold 3 database (Huge memory cost) and the term of use of AlphaFold 3 parameters (You have to request it from Google). Thus, it is achieved by running a Colab container in docker on a local or remote machine and host it to Google Colab.

alphafold3_colab_jupyter

[v-shaoningli]

I make a mmseqs-based MSA pipeline for alphafold3 with full docs. You can try if you're interested.

[GXcells]

I make a mmseqs-based MSA pipeline for alphafold3 with full docs. You can try if you're interested.

That is great.

Would it be possible to use it also to do mmseqs2 but on the alphafold3 database instead of the one from colabfold?