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Error extracting the uniref30

Open ahof1704 opened this issue 1 year ago • 0 comments

Hi,

I am trying to follow the steps to download the db to run the MSA locally. I have used the download script to get uniref30. The download seems to have been completed successfully, but the extraction of the .tar fails. Any suggestions on how to address this? Thanks

uniref30_2302.tar.gz     100%[==================================>]  95.85G  4.12MB/s    in 6h 20m  
2024-05-01 23:17:52 (4.29 MB/s) - ‘uniref30_2302.tar.gz’ saved [102918187842/102918187842]

+ set -e
+ return 0
+ tar xzvf uniref30_2302.tar.gz
uniref30_2302.md5sum
tar: uniref30_2302.md5sum: Cannot change ownership to uid 528745, gid 9100: Invalid argument
uniref30_2302.tsv
tar: uniref30_2302.tsv: Cannot change ownership to uid 528745, gid 9100: Invalid argument
uniref30_2302_h.tsv
tar: uniref30_2302_h.tsv: Cannot change ownership to uid 528745, gid 9100: Invalid argument
uniref30_2302_aln.tsv
tar: uniref30_2302_aln.tsv: Cannot change ownership to uid 528745, gid 9100: Invalid argument
uniref30_2302_seq.tsv
tar: uniref30_2302_seq.tsv: Cannot change ownership to uid 528745, gid 9100: Invalid argument
uniref30_2302_db_mapping
tar: uniref30_2302_db_mapping: Cannot change ownership to uid 528745, gid 9100: Invalid argument
uniref30_2302_db_taxonomy
tar: uniref30_2302_db_taxonomy: Cannot change ownership to uid 528745, gid 9100: Invalid argument
tar: Exiting with failure status due to previous errors

This is the list of files downloaded

ls -l /root/colabfold_db
.rw-------  337 root 22 May  2023 uniref30_2302.md5sum
.rw-rw-r-- 103G root 22 May  2023 uniref30_2302.tar.gz
.rw------- 9.1G root 16 May  2023 uniref30_2302.tsv
.rw-------  31G root 16 May  2023 uniref30_2302_aln.tsv
.rw------- 5.8G root 22 May  2023 uniref30_2302_db_mapping
.rw------- 668M root 22 May  2023 uniref30_2302_db_taxonomy
.rw-------  46G root 16 May  2023 uniref30_2302_h.tsv
.rw------- 137G root 16 May  2023 uniref30_2302_seq.tsv

ahof1704 avatar May 02 '24 00:05 ahof1704