ColabFold
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trying to save compute time by using previous prediction to model next prediction (e.g. now using Amber or making mutation)
hope to use previous rank1 output pdf file (renamed equivalent to abcd.pdb) as Custom Template
Current Behavior
Steps to Reproduce (for bugs)
Please make sure to reproduce the issue after a "Factory Reset" in Colab.
Could not find this in the Runtime dropdown menu. Instead I did "Disconnect and delete Runtime". Issue unchanged.
If running locally ypdate you local installation colabfold_batch
to the newest version.
Please provide your input if you can share it.
ColabFold Output (for bugs)
wtct.pdb(chemical/x-pdb) - 208575 bytes, last modified: n/a - 0% done
MessageError Traceback (most recent call last)
3 frames /usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec) 101 ): 102 if 'error' in reply: --> 103 raise MessageError(reply['error']) 104 return reply.get('data', None) 105
MessageError: RangeError: Maximum call stack size exceeded.
Context
Providing context helps us come up with a solution and improve our documentation for the future.
Running T4 GPU session.
Your Environment
Include as many relevant details about the environment you experienced the bug in.
- Git commit used : ???
- Operating system and version: Mac Ventura using Safari
I tried to attach the pdf file in question but it is not an allowed file type - so I added a further ".txt" suffix wtct.pdb.txt
I think this was a Safari specific issue within Google Colaboratory where the upload box just won’t work. I recommend using Firefox.