ColabFold icon indicating copy to clipboard operation
ColabFold copied to clipboard

Failing to convert tsv to exprofiledb for Uniref30 files in setup_databases.sh

Open allcatsaregrey opened this issue 11 months ago • 2 comments

Expected Behavior

mmseqs tsv2exprofiledb "${UNIREF30DB}" "${UNIREF30DB}_db" should complete without error

Current Behavior

Above line fails with error

tsv2db uniref30_2302_h.tsv uniref30_2302_db_h --output-dbtype 12 -v 3

Output database type: Generic

Cannot open index file uniref30_2302_db_h.index.0

Steps to Reproduce (for bugs)

Running latest version of setup_databases.sh

ColabFold Output (for bugs)

N/A

Context

Trying to setup the data on an HPC cluster, localcolabfold installs and runs without apparent issue.

Your Environment

Running on HPC cluster Occurs with mmseqs2/14-7e284 mmseqs2/15-6f452

md5 info 561357acea9a9a9c3a8ef2087572c8fe uniref30_2302_db_taxonomy 2b9d4e68fda54688f31da97990c1e783 uniref30_2302_db_mapping 565d6cbf9f1f88a1de45c6d8d962f670 uniref30_2302.tsv 2171bf9e8cb75794c1beb3ef051df124 uniref30_2302_h.tsv 4a78261de458479f2b341ceba9cedde1 uniref30_2302_aln.tsv efe6bc2b273f4bd4d7271e3e1af80806 uniref30_2302_seq.tsv

allcatsaregrey avatar Mar 16 '24 20:03 allcatsaregrey