When downloading database for local MSA, what is the format of the database folder?

Open linuxfold opened this issue 3 years ago • 0 comments

Is it normal for the finished database (after mmseqs tsv2exprofiledb and mmseqs createindex) to consist of:

colabfold_envdb_202108.tsv colabfold_envdb_202108_aln.tsv colabfold_envdb_202108_db.0-63 (64 files) colabfold_envdb_202108_db.dbtype colabfold_envdb_202108.idx.1-4 (4 files) colabfold_envdb_202108_db.idx.dbtype colabfold_envdb_202108_db.index colabfold_envdb_202108_db_aln.0-63 (64 files) colabfold_envdb_202108_db_aln.dbtype colabfold_envdb_202108_db_aln.index colabfold_envdb_202108_db_h colabfold_envdb_202108_db_h.dbtype colabfold_envdb_202108_db_h.index colabfold_envdb_202108_db_seq.0-63 (64 files) colabfold_envdb_202108_db_seq.dbtype colabfold_envdb_202108_db_seq.index colabfold_envdb_202108_db_seq_h colabfold_envdb_202108_db_seq_h.dbtype colabfold_envdb_202108_db_seq_h.index colabfold_envdb_202108_db_h.tsv colabfold_envdb_202108_seq.tsv

and then a similar set of files all for uniref30_2103

or is something going wrong during the mmseqs command?

Jun 22 '22 08:06 linuxfold