ColabFold
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rerun interrupted Run Prediction command in colabfold
@sokrypton I am using ColabFold: AlphaFold2 using MMseqs2 and free version of google colab. In Run Prediction command after building 4 models the system become busy (which can be connected again just rerunning the command). But rerunning command start building model from the beginning (from model 1). Is there any way that I resume model building from where the process interrupted (from model 4).
Do you keep the colab tab open or do you close it?
In my experience, Colab shows busy when code is running but for some reason the page lost contact to the server in between. In most scenarios this isn't problematic since the code is still executing, and once it finishes you will again be able to run other commands, see the output of current command, e.t.c - just wait for execution to complete. I believe it can anywhere from 30 min to 2 hrs.