Normal notebook crashing on multimer run

[gezmi]

Hi,

I was running a complex with the AlphaFold2.ipynb notebook (I only provided a sequence with : and a job name). This was the error I got when running the Run prediction cell:

RuntimeError                              Traceback (most recent call last)

RuntimeError: module compiled against API version 0xe but this version of numpy is 0xd

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ImportError                               Traceback (most recent call last)

<ipython-input-3-91283de158b2> in <module>()
      5 from colabfold.download import download_alphafold_params, default_data_dir
      6 from colabfold.utils import setup_logging
----> 7 from colabfold.batch import get_queries, run, set_model_type
      8 
      9 from colabfold.colabfold import plot_protein

9 frames

/usr/local/lib/python3.7/dist-packages/tensorflow/python/client/pywrap_tf_session.py in <module>()
     17 # pylint: disable=invalid-import-order,g-bad-import-order, wildcard-import, unused-import
     18 from tensorflow.python import pywrap_tensorflow
---> 19 from tensorflow.python.client._pywrap_tf_session import *
     20 from tensorflow.python.client._pywrap_tf_session import _TF_SetTarget
     21 from tensorflow.python.client._pywrap_tf_session import _TF_SetConfig

ImportError: SystemError: <built-in method __contains__ of dict object at 0x7fee7e3ef190> returned a result with an error set


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What could be the problem?

[milot-mirdita]

This is the same issue as https://github.com/sokrypton/ColabFold/issues/154. I am investigating.

[milot-mirdita]

The notebook should work again (you might have to do a colab factory reset under Runtime->Factory reset runtime first).