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fail in colabfold_search.sh with bfd_mgy_colabfold

Open 346302761 opened this issue 3 years ago • 0 comments

I download uniref30_2103 and bfd_mgy_colabfold from https://colabfold.mmseqs.com/, following the steps to create the respective _db. Then run colabfold_search.sh against uniref30_2103_db and bfd_mgy_colabfold_db. I only got the alignment uniref.a3m. The profile search against bfd_mgy_colabfold_db failed with the following error (in the step of 'mmseqs expandaln'):

terminate called after throwing an instance of 'std::logic_error'

It seems that all intermediate files with res_env_exp* are empty.

PS: I am able to run through uniref30_2103_db+colabfold_envdb_202108. I guess there are some issue with the bfd_mgy_colabfold database?

346302761 avatar Jan 27 '22 02:01 346302761