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Published 20 hours ago • verified publisher icon soedinglab

Core dump during assembly

Open apcamargo opened this issue 5 years ago • 2 comments

My processes are constantly crashing in the middle of the assembly. I get a *** glibc detected *** plass: invalid fastbin entry (free): 0x0000000000815a60 ***.

plass.segmentation.log

I installed Plass through Conda, due to the old libraries of the server I'm working in.

I'm using Plass 2.c7e35, 2TB of memory, 16 × Intel(R) Xeon(R) CPU E5-4650 v2 @ 2.40GHz, Red Hat Enterprise Linux Server release 6.5.

apcamargo avatar Sep 25 '19 14:09 apcamargo

Hi,

I fixed some smaller bugs in plass also related to memory access in the last months. Could you try to use the latest version from github?

@martin-steinegger Can you update the conda version of plass? (It's almost one year old)

AnnSeidel avatar Sep 25 '19 15:09 AnnSeidel

@AnnSeidel yes its really about time. Should we get the header change in before we make the conda package?

martin-steinegger avatar Sep 25 '19 17:09 martin-steinegger