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HHBLITS throughs segmentation fault
I am trying to generate a3m and hhr files using hhblits 3.2.0. My fasta file sequence length is 53. When I try to execute hhblits with that input file, it shows segmentation fault. For the testing purpose, I have reduced the sequence length to 5. It is working fine without any error. I thought it is a memory issue. So I allocated 26gb ram for execution. Still, it shows segmentation fault. Can anybody help me?
My input command: hhblits -i 1a02F00.fasta -oa3m 1a02F00.a3m -o 1a02F00.hhr -d ../hhblits/uniclust30_2018_08 -cpu 4 -n 3
I can't reproduce the issue locally.
Can you try a newer version of the database (http://wwwuser.gwdg.de/~compbiol/uniclust/2020_03)? Does it also happen on another machine? Can you try using the latest git version of HHsuite?
Hi, did you resolve this issue? I'm having the same problem, could you let me know how you resolved it?