Inquiry on contig clustering

[LanSabb]

Hi

Thanks for nice tool

I want to cluster the contigs assembled using short- and long-reads from multiple tools

I attempted to assemble contigs using other tools (I will not mention the tool name as he/she will not like it), but the resulting clustered contigs led to undesirable outputs (a lot of contaminated MAGs after binning compared to the binning outputs without contig clustering)

I would like to ask whether mmseq cluster is applicable for contig clustering or not

Thanks !