MMseqs2
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msa2profile gets "killed" when processing eggNOGDB
Hello,
I am trying to generate databases and after downloading, for example, the eggNOGDB, I get the following error:
msa2profile /mnt/d/seq_data/tmp/14551941542608933155/msa /mnt/f/seq_data/transannot_dbs/eggNOGDB --match-mode 1 --match-ratio 0.5 --threads 32 -v 3
MMseqs Version: 17.b804f
MSA type 2
Substitution matrix aa:blosum62.out,nucl:nucleotide.out
Match mode 1
Match ratio 0.5
Pseudo count mode 0
Pseudo count a substitution:1.100,context:1.400
Pseudo count b substitution:4.100,context:5.800
Compositional bias 1
Compositional bias 1
Global sequence weighting false
Filter MSA 1
Use filter only at N seqs 0
Minimum coverage 0
Minimum seq. id. 0.0
Minimum score per column -20
Maximum seq. id. threshold 0.9
Select N most diverse seqs 1000
Gap open cost aa:11,nucl:5
Gap extension cost aa:1,nucl:2
Skip query false
Threads 32
Compressed 0
Verbosity 3
Finding maximum sequence length and set size.
Killed=================================================> ] 84.02% 293.85K eta 3m 17s s
Disk space should not be an issue. Could it be memory? I see that the DB is split in several files that should fit into memory.
Any advice is welcome.