MMseqs2
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Running linclust on NFS
Hi,
I'm running linclust
on a cloud instance with network file systems. I'm wondering which --db-load-mode
should I use to alleviate the I/O bottleneck of NFS.
--db-load-mode INT Database preload mode 0: auto, 1: fread, 2: mmap, 3: mmap+touch [0]
Thanks
--db-load-mode
won't help in this case. The parameter handles loading of precomputed indices of (search) databases. Normally, we don't use precomputed indices for clustering.
Ideally the tmp
folder should be on a local drive, that's the only optimization you can reasonably do.