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Published 20 hours ago • verified publisher icon soedinglab

BLAT-like search

Open xiekunwhy opened this issue 3 years ago • 1 comments

Expected Behavior

Is it possible to use mmseqs2 to do BLAT-like search or give result format like blat (https://genome.ucsc.edu/cgi-bin/hgBlat), how to do that if it is possible?

Best, Kun

xiekunwhy avatar Dec 14 '21 14:12 xiekunwhy

You can use the --format-output parameter to define your custom columns in the output format. Read more about this here.

martin-steinegger avatar Feb 02 '22 06:02 martin-steinegger