CCMpred
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Why not use the -b argument to generate BRAW files?
Hello, I have a question to ask you, when I used ccmpred example.mat -b example.braw command to generate braw file, there was an error. Error: unknown option b at argument index 22 So I can't generate my own BRAW file. But I see that your source code has the -b parameter. #ifdef MSGPACK printf("\t-b BRAWFLE\tStore raw prediction matrix in msgpack format in BRAWFLE\n"); May I ask what is the cause of this problem? Any thoughts would be greatly appreciated! Thanks.
me too when I use this ./ccmpred -h, there are not -b options
Usage: ./ccmpred [options] input.aln output.mat Options: -n NUMITER Compute a maximum of NUMITER operations [default: 50] -e EPSILON Set convergence criterion for minimum decrease in the last K iterations to EPSILON [default: 0.01] -k LASTK Set K parameter for convergence criterion to LASTK [default: 5]
-i INIFILE Read initial weights from INIFILE
-r RAWFILE Store raw prediction matrix in RAWFILE
-w IDTHRES Set sequence reweighting identity threshold to IDTHRES [default: 0.8]
-l LFACTOR Set pairwise regularization coefficients to LFACTOR * (L-1) [default: 0.2]
-A Disable average product correction (APC)
-R Re-normalize output matrix to [0,1]
-h Display help
I have met this problem,and I installed it from the latest branch.If you solved the problem,can you teach me?