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Published 20 hours ago • verified publisher icon snystrom

data viz

Open snystrom opened this issue 4 years ago • 1 comments

  • [ ] visualization for occurance along linear feature (ex indicating position of motifs along multiple proteins)
    • using relative position to start site coords (ie 1 -> N)

Interesting tools

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snystrom avatar Sep 02 '20 16:09 snystrom

Note, that GRanges and get_sequence can be used for non-DNA sequences. In particular, in FIMO if each sequence name is a different gene, RNA, protein, etc. And setting parse_genomic_coords = FALSE, you have an easy representation of seqnames = feature & coords = location of match.

snystrom avatar Sep 03 '20 01:09 snystrom