Spencer Nystrom

Results 51 comments of Spencer Nystrom

Hey Seb, There's no builtin way to do this in `memes` today. However, it could be added. In general, my philosophy has been to wait until someone asks before adding...

If you were interested in implementing this feature yourself, I would happily provide advice & consider any PR's if you wanted to make them. Just let me know!

Nice find! It looks like there is quite a bit of information loss on `glam2psfm` unfortunately unless all you cared about were the motifs themselves (without the associated score data,...

Neat application of MEME -> MAST iterative refinement of motifs. Conserved regulatory motifs in bacteria: riboswitches and beyond. Cei Abreu-Goodger, Nancy Ontiveros-Palacios, Ricardo Ciria, Enrique Merino

This is a good idea. I don't have plans to tackle this in the short term at the moment, unfortunately, but it does appear to be relatively straightforward to do,...

Hi, this is usually because of missing a system dependency, but to help me debug, could you try rerunning `runStreme` but set `silent = FALSE` and post the full output...

I'm having a hard time with the formatting of this message. Could you please post the code you ran, as well as the error message inside of a code block...

Can you also post the output of `sessionInfo()` inside a code block?

Ah, perfect thanks so much this makes a lot more sense now. This looks like that warning could be a bug with STREME directly: you could try posting about it...

Hi @cparsania, could you tell me the version of `DREME` you are running as well as how you installed the MEME Suite?