Stephen J Newhouse

icon indicating an email [email protected]

icon location Wirral icon location Data Scientist, Bioinformatician, Dad, Husband, MS warrior

Results 45 comments of Stephen J Newhouse

Re Dev : To Do

https://github.com/BD2KGenomics/gatk-whole-genome-pipeline/blob/master/GATKsetup.sh

Re Dev : To Do

https://github.com/BD2KGenomics

Re Dev : To Do

SJN dev in `/mnt/data1/scratch/ngseasy`

Re Dev : To Do

git lfs : https://git-lfs.github.com/

Re Dev : To Do

``` bash cp -v GRCh38_full_analysis_set_plus_decoy_hla.fa GRCh38dH.fasta 'GRCh38_full_analysis_set_plus_decoy_hla.fa' -> 'GRCh38dH.fasta' ```

Cleanup RUNs don't reduce image size

@SeijiSuenaga thanks for the tip

Testing Network Speed : speedtest-cli

source : http://askubuntu.com/questions/104755/how-to-check-internet-speed-via-terminal

Fail if Installdir unset

yup

NGSeasy Calling issue

Hi @belhocine13 can you let me know what version of Docker you are running, OS you are using (Mac/Linux?) etc and can you reproduce the error and share some screen...

Defaults to placing log and tmp dirs in home dir

yeah - all this needs cleaning up...rush job