UHGV
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snayfach
Unified Human Gut Virome Catalog
Hi, when I used uhgv-tools, I had two questions. 1.what's threshold MCL uses when clustering, especially what edge weight is? 2.I notice that you used blast before cluster, I want...
Could you can tell me which checkv database version were used? Because I found the different checkv database version the result is also different. Thank you!
Please tell me how to get the "taxon_alias" in "votus_metadata_extended.tsv"?
Hi, 1. I check "genome_taxonomy.tsv" in uhgv-db-v0.4 is 57514 lines .(57514 is the number of high-quality, species level representatives): " The column behind the species_vc is also high quality ?...
Hi,   1. "vOTU-044052" is high quality representative genomes for species level vOTUs, "vSUBGEN-26510","vGENUS-00487","vSUBFAM-00038","vFAM-00068" , can the four viral clusters be viewed as the same high-quality representative genome?
Hi, I use checkV script aniclust.py to get specie_level votu:  then, i use /MGV/aai_cluster/amino_acid_identity.py and filter_aai.py to get genus and family level votu: genus_level cluster:  family_level cluster: ...
Hi ,  In uhgv-db-v0.4 , why taxon_id has 5 format, it use the highest level to represent the taxon_id ?
Hi Stephen, Thanks for your pipeline of human gut viruses classification. I was trying to use the uhgv-tools to classifiy viral contigs, but I met one error when I repeat...
Hi Stephen Thank you for this excellent resource - Really looking forward to reading the preprint. Until then can you describe what clustering (MCL?) parameters and cutoffs you used for...
