snakemake icon indicating copy to clipboard operation
snakemake copied to clipboard

Latest docker image does not include conda/mamba

Open percyfal opened this issue 1 year ago • 0 comments

Snakemake version

v8

Describe the bug

Missing conda/mamba in snakemake docker image. From v8 (?) parent image is mambaorg/micromamba which uses micromamba but does not ship conda/mamba executables by default and causes github actions to fail. See https://github.com/snakemake/snakemake-github-action/issues/37 for workaŕounds.

Logs

Minimal example

Additional context

percyfal avatar Jan 05 '24 11:01 percyfal