snakemake-wrappers

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### Description Created a wrapper for coolpup.py (https://github.com/open2c/coolpuppy) ### QC * [x] I confirm that: For all wrappers added by this PR, * there is a test case which covers...

Phlya

STAR wrapper - No output/error if CPUs don't support SIMD

6

**Snakemake version** The described bug is independent of the used Snakemake version. **Describe the bug** I've already reported the bug here: https://github.com/alexdobin/STAR/issues/2030 But basically the with the wrapper installed STAR...

KuechlerO

the output files generated by using STAR in snakemake-wrappers should be more comprehensive.

6

I'm currently working on setting up a simple RNA-seq analysis pipeline using snakemake, and I've integrated the STAR wrapper from snakemake-wrappers. However, I've run into an issue where specifying `--quantMode...

zhongzheng1999

Automatic bump of bio/unicycler.

snakedeploy-bot[bot]

perf: autobump bio/trimmomatic/se

1

Automatic update of bio/trimmomatic/se.

snakedeploy-bot[bot]

Automatic update of bio/rubic.

snakedeploy-bot[bot]

Automatic bump of bio/manta.

snakedeploy-bot[bot]

perf: autobump bio/kallisto/quant

3

Automatic bump of bio/kallisto/quant.

snakedeploy-bot[bot]

Automatic update of bio/freebayes.

snakedeploy-bot[bot]

perf: autobump bio/dragmap/align

2

Automatic update of bio/dragmap/align. ## Summary by CodeRabbit - **New Features** - Introduced a new Conda environment specification file for Linux 64-bit systems, simplifying package installation for bioinformatics workflows. -...

snakedeploy-bot[bot]