bowtie2 wrappers fail on OSX (10.15.7)

[hobrien]

This appears to be a problem with the conda recipe for bowtie2 v. 2.4.1:

conda activate .snakemake/conda/958e18f4cb4cf1f5eafd39781081e659
bowtie2

dyld: Library not loaded: @rpath/libtbb.dylib Referenced from: .snakemake/conda/958e18f4cb4cf1f5eafd39781081e659/bin/bowtie2-align-s Reason: image not found (ERR): Description of arguments failed! Exiting now ...

If I install the latest bowtie2 version (2.4.4) it works without error

[megancamilla]

I have hit exactly this same error message with the same OSX version. Is there a way to change which version of bowtie2 the wrapper uses easily?

[fgvieira]

Just made a PR with several bug fixes, but could not test it in OSX. Can you give it a try and let me know?

thanks,

[johanneskoester]

PR (#469) has been merged. You can also just try release 1.3.2 or the master branch. Thank you so much!

[github-actions[bot]]

This issue was marked as stale because it has been open for 6 months with no activity.

[github-actions[bot]]

This issue was closed because it has been inactive for 1 month since being marked as stale. Feel free to re-open it if you have any further comments.