snakemake-wrappers
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perf: autobump bio/sortmerna
Automatic bump of bio/sortmerna.
Summary by CodeRabbit
-
New Features
- Upgraded the
sortmernapackage from version 4.3.6 to 4.3.7, improving performance and compatibility. - Expanded the dependency list with multiple new packages from
conda-forge, enhancing environment stability and access to updated libraries.
- Upgraded the
-
Bug Fixes
- The update to
sortmernamay include bug fixes not specified in the documentation.
- The update to
-
Chores
- Updated environment configuration files to reflect the latest package versions and dependencies.
It seems sortmerna is migrating from bioconda to conda-forge and version 4.3.7 is invalid (sortmerna/sortmerna#423, conda-forge/staged-recipes#25438, bioconda/bioconda-recipes#48607)
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Walkthrough
The changes involve upgrading the sortmerna package from version 4.3.6 to 4.3.7 in both the environment.linux-64.pin.txt and environment.yaml files. The dependency management strategy has been revised, replacing the previous single package reference with multiple new packages sourced from the conda-forge channel, enhancing the overall environment setup for bioinformatics tasks.
Changes
| Files | Change Summary |
|---|---|
bio/sortmerna/environment.linux-64.pin.txt |
Updated sortmerna from version 4.3.6 to 4.3.7; replaced single package reference with multiple new package links from conda-forge. |
bio/sortmerna/environment.yaml |
Upgraded sortmerna version from 4.3.6 to 4.3.7, indicating an update to maintain the software environment. |
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Still something wrong with the conda build: sortmerna/sortmerna#438