rna-seq-star-deseq2
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SyntaxError in line 14 of Snakefile
Thanks for creating this package. I've followed instructions here through to step 4, at which point when I try to run the workflow I get the following:
$snakemake --cores all -n
SyntaxError in line 14 of /path/to/workflow/Snakefile:
invalid syntax (Snakefile, line 14)
Line 14 being the config:
line in the following context
...
module rna_seq_star_deseq2:
snakefile:
/path/to/workflow/Snakefile
config:
config
...
I can't see anything wrong with my config file. As far as I'm aware the packages from snakemake/deploy are all there. I also undid all of my project-specific entry data to the files in config and set them back to being identical to the original template. Do you have any idea where this is coming from?