hdWGCNA

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allowWGCNAThreads() use instead of enableWGCNAThreads() for RStudio, MacOSX

3

Hi, Thanks for creating such a great tool! And congratulations on defending your PhD! Just a note that using my settings (described below), I continually got an error with TestSoftPowers...

bpyenson

First of all thank you very much for creating this package that has been very useful to me. An error occurred when I used the "MotifOverlapBarPlot" and "MotifTargetScore" functions to...

zhezhu123

Error in if (!(multi.group.by %in% names([email protected]))) { : argument is of length zero

1

**Describe the bug** when I run the code of hdWGCNA, a error can not be solved by myself. Whether I use official website's files or my own data, I get...

Carl6231

Module Eigengenes: Adjust the function to permit fewer pcs to be calculated

1

Hi, I've used the hdWGCNA method for a few different analyses, and have run into some issues when trying to use it on a small sample set. From what I've...

jhaberbe

performing hdWGCNA analysis for seurat Assay5 object

1

**Error** Hello! Thank you for creating such an awesome package! I used seurat assay 5 to perform hdWGCNA analysis. All function worked well until ModuleEigengenes function. When I run ModuleEigengenes,...

wangBiojin

Enrichr filtering & background

4

Hi Sam, It seems that the Enrichr table is only filtered based on the enrich score. Would it be possible to filter by the adjusted p-val first? For example only...

DelongZHOU

Question about exporting the networks to Metascape

4

Hi Sam, I wonder if there is a way to export the networks to Metascape so I can annotate the network with other information like protein-protein interaction or gene ontology...

DelongZHOU

Using module_trait_correlation to identify gene modules associated with specific disease states.

10

Hello, I have been learning about module_trait_correlation (https://smorabit.github.io/hdWGCNA/articles/module_trait_correlation.html), which includes two aspects of significance in the correlation heatmap. It conducts a correlation analysis between gene modules and traits based on...

Li-mengjie

Removing anti-correlated genes from module

5

Hi, I created a signed network and found that some of the genes in my modules aren't moving in the direction I'd like them to. I'm trying to create a...

mitchTwoTimes

Hello - would it be possible to add corrplot as an import, since it is being used in ModuleCorrelogram()?

bbimber