hdWGCNA
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Error in if (!(multi.group.by %in% names([email protected]))) { : argument is of length zero
When I try to construct metacells in each group, I meet the error below.
> unique(seurat_obj@misc[["tutorial"]][["wgcna_metacell_obj"]]@meta.data$cell_type)
[1] "0" "1" "2" "3" "4" "5" "6" "7" "8" "9"
> seurat_obj <- SetDatExpr(
+ seurat_obj,
+ group_name = c("4"), # the name of the group of interest in the group.by column
+ group.by='cell_type', # the metadata column containing the cell type info. This same column should have also been used in MetacellsByGroups
+ assay = 'RNA', # using RNA assay
+ slot = 'data' # using normalized data
+ )
Error in if (!(multi.group.by %in% names([email protected]))) { :
argument is of length zero
I don't know how to solve this error, I will be grateful if someone tell me how to solve this issue.