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Chronologer Retention Time model predictor

Open elaboy opened this issue 1 year ago • 1 comments

This PR adds the Chronologer model and the weights from the article.

  • https://www.biorxiv.org/content/10.1101/2023.05.30.542978v1
  • https://github.com/searlelab/chronologer

Proteomics csporj file now contains a conditional installing statement for the operating system, this is to enable CUDA for compatible OS

elaboy avatar Feb 13 '24 19:02 elaboy

Codecov Report

Attention: Patch coverage is 97.65101% with 7 lines in your changes missing coverage. Please review.

Project coverage is 75.69%. Comparing base (71828ee) to head (a99a4c4).

Files with missing lines Patch % Lines
...rediction/ChronologerModel/ChronologerEstimator.cs 96.68% 5 Missing and 2 partials :warning:
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #761      +/-   ##
==========================================
+ Coverage   75.48%   75.69%   +0.20%     
==========================================
  Files         201      203       +2     
  Lines       30857    31152     +295     
  Branches     3112     3137      +25     
==========================================
+ Hits        23292    23580     +288     
- Misses       7039     7044       +5     
- Partials      526      528       +2     
Files with missing lines Coverage Δ
...gmentation/Peptide/TerminusSpecificProductTypes.cs 100.00% <ø> (ø)
mzLib/Proteomics/Protein/Protein.cs 95.70% <100.00%> (ø)
...tionTimePrediction/ChronologerModel/Chronologer.cs 100.00% <100.00%> (ø)
...rediction/ChronologerModel/ChronologerEstimator.cs 96.68% <96.68%> (ø)

codecov[bot] avatar Feb 13 '24 19:02 codecov[bot]