Only quantify peptides that clear the q-value threshold

[Alexander-Sol]

Previously, when we wrote the AllQuantifiedPeptides output, we filtered based off of PSM q-value. So you would have some peptides with high q-values reported in the quant results. This fixes that!

In order to fix that, I had to reconfigure FDR calculation at the PSM and Peptide level. I did this by adding two new fields to SpectralMatch: PsmFdrInfo and PeptideFdrInfo. The names are self explanatory. There are a variety of toggles that were added to specify when Psm level FDR info should be used and peptide level info should be used.