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Possible discrepancy between the AllQuantifiedPeptides and AllPeptides files
Describing the issue
Some peptide sequences that are in the AllQuantifiedPeptides are not listed in the AllPeptides. Is this expected? I can provide the files via Email. Look at peptide WDETPASQMGGSTPVLTPGK for example. Reproducing the error
- Protein database
Human SwissProt version 01_2022
- Mass spectrometry file types
Thermo Raw.
- Settings
- Example datafiles
Expected behavior for GUI
Screenshots
Desktop information
Additional context