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Enable Users to Download Latest FASTA or XML Sequence Libraries Directly from UniProt

Open trishorts opened this issue 4 years ago • 4 comments

This command works in C# to get the database.

Client.DownloadFile(@"https://www.uniprot.org/uniprot/?query=proteome:UP000005640 reviewed:yes&format=xml", @"C:\Users\h.xml");

We could make a database directory at the same level as "Mods" There is apparently a way to store the date with the file. So we can see if one needs an update. Using this date might also make the prose.txt file more data rich.

trishorts avatar Aug 27 '20 17:08 trishorts

And format=fasta&include=yes will give isoform sequences

acesnik avatar Aug 27 '20 17:08 acesnik

this is really cool, I'd love to see this in MM

rmillikin avatar Aug 27 '20 17:08 rmillikin

https://www.uniprot.org/help/api%5Fqueries

trishorts avatar Sep 03 '20 21:09 trishorts

query syntax https://www.uniprot.org/help/text-search

trishorts avatar Sep 03 '20 22:09 trishorts