MetaMorpheus
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Enable Users to Download Latest FASTA or XML Sequence Libraries Directly from UniProt
This command works in C# to get the database.
Client.DownloadFile(@"https://www.uniprot.org/uniprot/?query=proteome:UP000005640 reviewed:yes&format=xml", @"C:\Users\h.xml");
We could make a database directory at the same level as "Mods" There is apparently a way to store the date with the file. So we can see if one needs an update. Using this date might also make the prose.txt file more data rich.
And format=fasta&include=yes
will give isoform sequences
this is really cool, I'd love to see this in MM
https://www.uniprot.org/help/api%5Fqueries
query syntax https://www.uniprot.org/help/text-search