Commandline improvements

[acesnik]

• [x] Dockerize it
• [x] Make smithchemwisc Docker account
• [x] Automatic builds of docker image from the release branch on Docker Hub
• [x] Update readme for .NET Core vignette for mzMLs and using docker on Linux (or any) system
• [x] Add capability to generate default tomls from the commandline
• [ ] Make a tutorial for MetaMorpheus Docker (see https://github.com/smith-chem-wisc/FlashLFQ/wiki/Docker-Image for similar docker tutorial template)

Any other things I'm missing?

[acesnik]

Not sure how to deploy docker builds from GitHub organization repo https://forums.docker.com/t/cant-access-new-github-organization-for-automated-builds/1080/11

[acesnik]

I made a smithlab account on Docker Hub, though, if anyone wants to use it for some reason.

[acesnik]

Thanks for adding the default toml option. Just used it!

[acesnik]

• [x] note how to specify multiple files in the help menu (separated by space following the flag, e.g. -t toml1.toml toml2.toml -s spect1.mzML spect2.mzML)

[rmillikin]

docker hub deployments are automatic as of v0.0.306. also all merged PRs create a dev build which is also auto uploaded to docker hub.

[rmillikin]

the "latest" tag on dockerhub is also the latest release version

[acesnik]

I checked off the "Update readme for .NET Core vignette for mzMLs and using docker on Linux (or any) system" -- I think that was before the .NETCore version could read RAW files.

[acesnik]

@rmillikin You also ticked off the space-delimited issue. Feel free to close the issue 👍

[rmillikin]

sure. i think we still need a docker tutorial though

[rmillikin]

see https://github.com/smith-chem-wisc/FlashLFQ/wiki/Docker-Image for similar docker tutorial template