missing reference files ?

[EricDeveaud]

Hello,

while looking at the code I noticed in run-sep.sh that some references files are not distributed.

gg_13_5_ssu_align_99_pfiltered.fasta and gg_13_5_ssu_align_99_pfiltered.fasta are not available

        # resort to the default reference alignment, if not specified via command line argument
        alg="$DIR/ref/gg_13_5_ssu_align_99_pfiltered.fasta"

and

        # resort to the default reference alignment, if not specified via command line argument
        alg="$DIR/ref/gg_13_5_ssu_align_99_pfiltered.fasta"

while RAxML_info-reference-gg-raxml-bl.info is

        # resort to the default reference RAxML info file, if not specified via command line argument
        rxi="$DIR/ref/RAxML_info-reference-gg-raxml-bl.info"

regards

Eric