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Packaged pplacer produces segmentation fault

Open rpetit3 opened this issue 2 years ago • 2 comments

I'm running sepp, through busco and am currently experiencing the following with the included pplacer:

pplacer
Segmentation fault

If I install the latest version of pplacer from bioconda, I no longer get the segmentation fault.

Do you have any recommendations on how to fix this?

OS Details

PRETTY_NAME="Debian GNU/Linux 10 (buster)"
NAME="Debian GNU/Linux"
VERSION_ID="10"
VERSION="10 (buster)"
VERSION_CODENAME=buster
ID=debian
HOME_URL="https://www.debian.org/"
SUPPORT_URL="https://www.debian.org/support"
BUG_REPORT_URL="https://bugs.debian.org/"

Update:

Works fine on another system

NAME="Red Hat Enterprise Linux Server"
VERSION="7.9 (Maipo)"
ID="rhel"
ID_LIKE="fedora"
VARIANT="Server"
VARIANT_ID="server"
VERSION_ID="7.9"
PRETTY_NAME=Storage
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:redhat:enterprise_linux:7.9:GA:server"
HOME_URL="https://www.redhat.com/"
BUG_REPORT_URL="https://bugzilla.redhat.com/"

REDHAT_BUGZILLA_PRODUCT="Red Hat Enterprise Linux 7"
REDHAT_BUGZILLA_PRODUCT_VERSION=7.9
REDHAT_SUPPORT_PRODUCT="Red Hat Enterprise Linux"
REDHAT_SUPPORT_PRODUCT_VERSION="7.9"

rpetit3 avatar Jun 29 '22 02:06 rpetit3

Yes, please update pplacer to the latest version of binaries from either the pplacer homepage or from bioconda.

RTH-tools avatar May 03 '23 09:05 RTH-tools