pasta
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soft link dependency locations in conda build script
after installing bioconda package, PASTA repeatedly returns errors because it looks for mafft
, hmmeralign
, opal.jar
, fasttree
, and raxml
not in the conda environment's binary directory, but in its Python version's site-packages directory. this is the workaround I've used which seems to work -- I don't think it's a great or stable solution, but it seems to work so far
oh i just realized that this is probably the same as https://github.com/bioconda/bioconda-recipes/issues/13892